TREM2 MAP-AD
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UMAP
DGE
Gene expression by group
Plot UMAP by
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Toggle to subset cells
Subset cells
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Select group(s) to subset
Toggle to facet cells
Facet by
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Dimension reduction
UMAP_Liger
UMAP_PCA
Label
TRUE
FALSE
Expression assay
counts
logcounts
Gene Name
Point size
alpha
Cell Type
Astro
EN
IN
Micro
Contrast
4G8 Amyloid-beta
PHF1 pTau
TREM2
CV
R47H
R47H_R62H
R62H
Gene Name
Groups to compare
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Toggle to subset cells
Subset cells
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Select group(s) to subset
Toggle to facet cells
Facet by
Sample manifest
Sequencing ID
Sequencing Batch
BBN
Diagnosis
Braak
Age
Sex
PMD
RIN
Brain Region
TREM2
TREM2Var
APOE
APOE-group
clusters
cluster_celltype
cluster_celltype_broad
4G8 Amyloid-beta
AT8 pTau
PHF1 pTau
Gene Name